If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ), 'gf_id' => 'ORTHO05D000640', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ), 'data_identifier' => 'ORTHO05D000640', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'ORTHO05D000640', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '718', 'num_species' => '89' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10620' => 'bna', 'A02p10630' => 'bna', 'A03p14830' => 'bna', 'A03p14840' => 'bna', 'A03p14850' => 'bna', 'A03p14890' => 'bna', 'A06p03800' => 'bna', 'A08p03480' => 'bna', 'A10p11350' => 'bna', 'Aa31LG3G7000' => 'aar', 'Aa31LG3G9960' => 'aar', 'Aa31LG3G9970' => 'aar', 'Ah.03g132060' => 'amhyb', 'Ah.03g142530' => 'amhyb', 'Ah.04g164510' => 'amhyb', 'Ah.05g166820' => 'amhyb', 'Ah.12g057070' => 'amhyb', 'Ah.12g057080' => 'amhyb', 'Ah.12g057090' => 'amhyb', 'Ah.12g058590' => 'amhyb', 'Ah.12g058600' => 'amhyb', 'AL1G58230' => 'aly', 'AL2G19400' => 'aly', 'AL2G19410' => 'aly', 'AL6G43040' => 'aly', 'AL6G43060' => 'aly', 'AL7G25190' => 'aly', 'AL7G25210' => 'aly', 'AL8G29130' => 'aly', 'AL8G29150' => 'aly', 'AL8G29160' => 'aly', 'Aqoxy1G02248' => 'aox', 'Aqoxy5G02125' => 'aox', 'Aqoxy5G03831' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2U0JEX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6AS2NW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6J67DK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6S731K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AET6CC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BAHA0A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BNFJ8I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAV700' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LJX15I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M8FABY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N9GJM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q2DHS0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Q451IY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RCB6EB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SW15V1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VP1WFQ' => 'arhy', 'AT1G50580' => 'ath', 'AT1G64910' => 'ath', 'AT1G64920' => 'ath', 'AT2G22930' => 'ath', 'AT3G29630' => 'ath', 'AT4G09500' => 'ath', 'AT4G27560' => 'ath', 'AT4G27570' => 'ath', 'AT5G53990' => 'ath', 'AT5G54010' => 'ath', 'AT5G54060' => 'ath', 'ATR0165G028' => 'atr', 'ATR0561G035' => 'atr', 'ATR0561G082' => 'atr', 'ATR1098G040' => 'atr', 'Atru.chr10.2195' => 'acertr', 'Atru.chr10.488' => 'acertr', 'Atru.chr2.2386' => 'acertr', 'AUR62010581' => 'cqu', 'AUR62010582' => 'cqu', 'AUR62010583' => 'cqu', 'AUR62014897' => 'cqu', 'AUR62015804' => 'cqu', 'AUR62016146' => 'cqu', 'AUR62016532' => 'cqu', 'AUR62017216' => 'cqu', 'AUR62017217' => 'cqu', 'AUR62017218' => 'cqu', 'AUR62017219' => 'cqu', 'AUR62017220' => 'cqu', 'AUR62017221' => 'cqu', 'AUR62017222' => 'cqu', 'AUR62017223' => 'cqu', 'AUR62017224' => 'cqu', 'AUR62017226' => 'cqu', 'AUR62019489' => 'cqu', 'AUR62026318' => 'cqu', 'AUR62026319' => 'cqu', 'AUR62026320' => 'cqu', 'AUR62026321' => 'cqu', 'AUR62026322' => 'cqu', 'AUR62026513' => 'cqu', 'AUR62026514' => 'cqu', 'AUR62026515' => 'cqu', 'AUR62026518' => 'cqu', 'AUR62029916' => 'cqu', 'AUR62031102' => 'cqu', 'AUR62033285' => 'cqu', 'AUR62033789' => 'cqu', 'AUR62033790' => 'cqu', 'AUR62036147' => 'cqu', 'BcaB01g04262' => 'bca', 'BcaB01g04263' => 'bca', 'BcaB01g04264' => 'bca', 'BcaB01g04265' => 'bca', 'BcaB01g04267' => 'bca', 'BcaB01g04268' => 'bca', 'BcaB01g04269' => 'bca', 'BcaB01g04270' => 'bca', 'BcaB04g17282' => 'bca', 'BcaB04g17283' => 'bca', 'BcaB04g17284' => 'bca', 'BcaB04g17285' => 'bca', 'BcaB04g17286' => 'bca', 'BcaB05g22099' => 'bca', 'BcaB05g22100' => 'bca', 'BcaB05g22102' => 'bca', 'BcaB05g22103' => 'bca', 'BcaB08g35756' => 'bca', 'BcaB08g35757' => 'bca', 'BcaC01g01236' => 'bca', 'BcaC01g06271' => 'bca', 'BcaC01g06274' => 'bca', 'BcaC01g06275' => 'bca', 'BcaC01g06276' => 'bca', 'BcaC01g06277' => 'bca', 'BcaC01g06278' => 'bca', 'BcaC01g06280' => 'bca', 'BcaC01g06281' => 'bca', 'BcaC01g06282' => 'bca', 'BcaC02g08399' => 'bca', 'BcaC03g14356' => 'bca', 'BcaC03g14357' => 'bca', 'BcaC04g20396' => 'bca', 'BolC2t07902H' => 'bol', 'BolC2t07903H' => 'bol', 'BolC2t09831H' => 'bol', 'BolC3t14148H' => 'bol', 'BolC3t14149H' => 'bol', 'BolC3t14150H' => 'bol', 'BolC3t14151H' => 'bol', 'BolC3t14159H' => 'bol', 'BolC3t21251H' => 'bol', 'BolC4t27005H' => 'bol', 'BolC4t27014H' => 'bol', 'BolC9t57287H' => 'bol', 'BraA02t06126Z' => 'bra', 'BraA02t06127Z' => 'bra', 'BraA03t10776Z' => 'bra', 'BraA03t10777Z' => 'bra', 'BraA03t10778Z' => 'bra', 'BraA03t10785Z' => 'bra', 'BraA06t23585Z' => 'bra', 'BraA06t25298Z' => 'bra', 'BraA08t32379Z' => 'bra', 'BraA10t43226Z' => 'bra', 'C02p17710' => 'bna', 'C02p17720' => 'bna', 'C02p38160' => 'bna', 'C02p38170' => 'bna', 'C03p17330' => 'bna', 'C03p17340' => 'bna', 'C03p17350' => 'bna', 'C03p17380' => 'bna', 'C03p17450' => 'bna', 'C03p89370' => 'bna', 'C03p89690' => 'bna', 'C04p54660' => 'bna', 'C04p54700' => 'bna', 'C09p44050' => 'bna', 'CAN.G371.15' => 'can', 'CANSAT01G1863' => 'cansat', 'CANSAT01G2698' => 'cansat', 'CANSAT11G0217' => 'cansat', 'CANSAT11G0683' => 'cansat', 'CANSAT11G0713' => 'cansat', 'CANSAT11G2333' => 'cansat', 'CANSAT21G0121' => 'cansat', 'CANSAT35G1461' => 'cansat', 'CANSAT64G2109' => 'cansat', 'CARHR040580' => 'chi', 'CARHR040610' => 'chi', 'CARHR056320' => 'chi', 'CARHR056330' => 'chi', 'CARHR235240' => 'chi', 'CARHR235250' => 'chi', 'CARHR235260' => 'chi', 'CARHR267150' => 'chi', 'CARHR267210' => 'chi', 'CARHR267220' => 'chi', 'Carub.0001s3962' => 'cru', 'Carub.0002s0987' => 'cru', 'Carub.0002s0988' => 'cru', 'Carub.0002s1002' => 'cru', 'Carub.0006s2789' => 'cru', 'Carub.0006s2833' => 'cru', 'Carub.0006s2834' => 'cru', 'Carub.0006s2835' => 'cru', 'Carub.0006s2836' => 'cru', 'Carub.0006s2837' => 'cru', 'Carub.0008s1429' => 'cru', 'Carub.0008s1431' => 'cru', 'Carub.0008s1432' => 'cru', 'Ca_00398_v3' => 'car', 'Ca_01726_v3' => 'car', 'Ca_01728_v3' => 'car', 'Ca_01729_v3' => 'car', 'Ca_01730_v3' => 'car', 'Ca_01732_v3' => 'car', 'Ca_01734_v3' => 'car', 'Ca_10417_v3' => 'car', 'Ca_14465_v3' => 'car', 'Ca_18910_v3' => 'car', 'Ca_30609_v3' => 'car', 'Cc01_g16510' => 'ccan', 'Cc01_g16590' => 'ccan', 'Cc01_g16600' => 'ccan', 'Cc02_g14190' => 'ccan', 'Cc05_g11630' => 'ccan', 'Cc05_g11640' => 'ccan', 'Cfa000545' => 'cfa', 'Cfa014675' => 'cfa', 'Cfa014676' => 'cfa', 'Cfa014677' => 'cfa', 'Cfa014678' => 'cfa', 'Ciclev10004868m.g' => 'ccl', 'Ciclev10008184m.g' => 'ccl', 'Ciclev10015186m.g' => 'ccl', 'Ciclev10017784m.g' => 'ccl', 'CiPaw.09G012100' => 'cil', 'CiPaw.09G065600' => 'cil', 'ClCG00G001810' => 'cla', 'ClCG00G001820' => 'cla', 'ClCG00G001840' => 'cla', 'ClCG02G002250' => 'cla', 'ClCG02G002540' => 'cla', 'ClCG02G002580' => 'cla', 'ClCG02G007640' => 'cla', 'ClCG05G009230' => 'cla', 'COL.COLO4_06709' => 'col', 'COL.COLO4_16113' => 'col', 'COL.COLO4_17429' => 'col', 'COL.COLO4_32611' => 'col', 'Cpa.g.c45254' => 'cpa', 'Cpa.g.sc8.121' => 'cpa', 'Cpa.g.sc80.9' => 'cpa', 'CsaV3_3G019550' => 'csa', 'CsaV3_7G002840' => 'csa', 'CsaV3_7G003220' => 'csa', 'CsaV3_7G003250' => 'csa', 'CsaV3_7G003260' => 'csa', 'CSS0006856' => 'camsi', 'CSS0007893' => 'camsi', 'CSS0013677' => 'camsi', 'CSS0014009' => 'camsi', 'CSS0022039' => 'camsi', 'CSS0025129' => 'camsi', 'CSS0026620' => 'camsi', 'CSS0030020' => 'camsi', 'CSS0040567' => 'camsi', 'CSS0040609' => 'camsi', 'CSS0042184' => 'camsi', 'CSS0047425' => 'camsi', 'CSS0050342' => 'camsi', 'DCAR_006580' => 'dca', 'DCAR_021269' => 'dca', 'DCAR_028036' => 'dca', 'Dinv02426' => 'din', 'Dinv14948' => 'din', 'Dinv19991' => 'din', 'Dinv30667' => 'din', 'Dinv34327' => 'din', 'Dinv40621' => 'din', 'Dinv40622' => 'din', 'Dinv43026' => 'din', 'Duzib132G0271' => 'dzi', 'Duzib133G0207' => 'dzi', 'Duzib170G0354' => 'dzi', 'Duzib213G0166' => 'dzi', 'Duzib213G0523' => 'dzi', 'Duzib213G0554' => 'dzi', 'Duzib235G1494' => 'dzi', 'ECA247G1327' => 'eca', 'EL10Ac4g07776' => 'bvu', 'EL10Ac4g08258' => 'bvu', 'EL10Ac4g08260' => 'bvu', 'EL10Ac4g09904' => 'bvu', 'EL10Ac6g13099' => 'bvu', 'EL10Ac6g13101' => 'bvu', 'EL10Ac6g13103' => 'bvu', 'EL10Ac6g13717' => 'bvu', 'EL10Ac7g17927' => 'bvu', 'EL10Ac7g17930' => 'bvu', 'EL10Ac8g20459' => 'bvu', 'Eucgr.F03293' => 'egr', 'Eucgr.F03295' => 'egr', 'Eucgr.F03296' => 'egr', 'Eucgr.F03297' => 'egr', 'Eucgr.K01076' => 'egr', 'Eucgr.K01079' => 'egr', 'Eucgr.L02697' => 'egr', 'FAN01G2744' => 'fan', 'FAN02G1922' => 'fan', 'FAN03G3061' => 'fan', 'FAN04G1746' => 'fan', 'FAN05G0619' => 'fan', 'FAN05G0877' => 'fan', 'FAN05G0951' => 'fan', 'FAN05G1849' => 'fan', 'FAN06G3539' => 'fan', 'FAN08G2478' => 'fan', 'FAN08G2553' => 'fan', 'FAN08G2849' => 'fan', 'FAN09G1577' => 'fan', 'FAN11G2916' => 'fan', 'FAN13G0182' => 'fan', 'FAN16G2297' => 'fan', 'FAN16G3462' => 'fan', 'FAN16G3542' => 'fan', 'FAN18G2351' => 'fan', 'FAN21G1348' => 'fan', 'FAN21G1370' => 'fan', 'FAN21G2685' => 'fan', 'FAN25G1435' => 'fan', 'FAN25G2820' => 'fan', 'FvH4_3g08341' => 'fve', 'FvH4_3g08360' => 'fve', 'FvH4_3g13460' => 'fve', 'FvH4_3g19220' => 'fve', 'FvH4_5g23070' => 'fve', 'FvH4_6g03920' => 'fve', 'FvH4_7g24190' => 'fve', 'Glyma.06G235000' => 'gma', 'Glyma.06G285700' => 'gma', 'Glyma.08G332500' => 'gma', 'Glyma.10G194000' => 'gma', 'Glyma.10G194101' => 'gma', 'Glyma.12G120200' => 'gma', 'Glyma.12G132500' => 'gma', 'Glyma.12G212600' => 'gma', 'Glyma.12G212702' => 'gma', 'Glyma.13G254700' => 'gma', 'Glyma.13G289000' => 'gma', 'Glyma.13G289100' => 'gma', 'Glyma.13G289200' => 'gma', 'Glyma.18G085800' => 'gma', 'Glyma.20G196000' => 'gma', 'Glyma.20G196201' => 'gma', 'Gohir.A01G059600' => 'ghi', 'Gohir.A01G059650' => 'ghi', 'Gohir.A01G059700' => 'ghi', 'Gohir.A01G060600' => 'ghi', 'Gohir.A04G015600' => 'ghi', 'Gohir.A06G189200' => 'ghi', 'Gohir.A06G201100' => 'ghi', 'Gohir.A09G055250' => 'ghi', 'Gohir.D01G045800' => 'ghi', 'Gohir.D01G045900' => 'ghi', 'Gohir.D01G046000' => 'ghi', 'Gohir.D01G046100' => 'ghi', 'Gohir.D01G047100' => 'ghi', 'Gohir.D05G370700' => 'ghi', 'Gohir.D06G197551' => 'ghi', 'Gohir.D06G197625' => 'ghi', 'Gohir.D06G197675' => 'ghi', 'Gohir.D06G208900' => 'ghi', 'Gohir.D06G209000' => 'ghi', 'Gohir.D06G209250' => 'ghi', 'Gohir.D11G146700' => 'ghi', 'Gorai.002G065300' => 'gra', 'Gorai.002G065400' => 'gra', 'Gorai.002G065500' => 'gra', 'Gorai.002G066600' => 'gra', 'Gorai.007G157200' => 'gra', 'Gorai.009G439200' => 'gra', 'Gorai.010G230100' => 'gra', 'Gorai.010G230200' => 'gra', 'Gorai.010G230400' => 'gra', 'Gorai.010G242800' => 'gra', 'Gorai.010G243100' => 'gra', 'GSVIVG01014265001' => 'vvi', 'GSVIVG01014267001' => 'vvi', 'GSVIVG01014269001' => 'vvi', 'GSVIVG01014270001' => 'vvi', 'GSVIVG01014271001' => 'vvi', 'GSVIVG01014272001' => 'vvi', 'HanXRQChr03g0078221' => 'han', 'HanXRQChr10g0279621' => 'han', 'Haze_13270' => 'cav', 'Haze_13271' => 'cav', 'Haze_13273' => 'cav', 'Haze_13274' => 'cav', 'Haze_13275' => 'cav', 'Haze_13276' => 'cav', 'Haze_13277' => 'cav', 'Hma1.2p1_0002F.1_g002400' => 'hma', 'Hma1.2p1_0180F.1_g079740' => 'hma', 'Hma1.2p1_0481F.1_g162290' => 'hma', 'Hma1.2p1_0608F.1_g188280' => 'hma', 'Hma1.2p1_0625F.1_g191480' => 'hma', 'Hma1.2p1_0805F.1_g221130' => 'hma', 'HPP92_023184' => 'vpl', 'Hund00477' => 'sun', 'Hund00633' => 'sun', 'Hund11478' => 'sun', 'Hund23911' => 'sun', 'Lalb_Chr01g0005881' => 'lal', 'Lalb_Chr01g0005891' => 'lal', 'Lalb_Chr01g0006061' => 'lal', 'Lalb_Chr02g0150811' => 'lal', 'Lalb_Chr15g0080291' => 'lal', 'Lalb_Chr15g0080961' => 'lal', 'Lalb_Chr18g0059331' => 'lal', 'Lalb_Chr20g0109471' => 'lal', 'Lalb_Chr20g0121451' => 'lal', 'Lalb_Chr22g0357001' => 'lal', 'Lj1g0008953' => 'lja', 'Lj1g0019886' => 'lja', 'Lj1P837T20' => 'lonja', 'Lj2A1122T42' => 'lonja', 'Lj2A506G45' => 'lonja', 'Lj3g0001537' => 'lja', 'Lj3g0009650' => 'lja', 'Lj3g0010835' => 'lja', 'Lj3g0010922' => 'lja', 'Lj3g0011730' => 'lja', 'Lj3g0011767' => 'lja', 'Lj3g0016557' => 'lja', 'Lj3g0017247' => 'lja', 'Lj3g0027551' => 'lja', 'Lj3P337T7' => 'lonja', 'Lj3P341T4' => 'lonja', 'Lj6g0009330' => 'lja', 'Lj6g0010244' => 'lja', 'Lj6g0020408' => 'lja', 'Lj6g0022800' => 'lja', 'Lj6g0027498' => 'lja', 'Lj8C291T8' => 'lonja', 'Lj8C292G2' => 'lonja', 'Lj8C292G4' => 'lonja', 'Lj8C292T2' => 'lonja', 'Lj8P153T28' => 'lonja', 'Lsat_1_v5_gn_2_66941' => 'lsa', 'Lsat_1_v5_gn_9_17340' => 'lsa', 'Manes.03G104400' => 'mes', 'Manes.09G018867' => 'mes', 'Manes.09G018934' => 'mes', 'Manes.12G093300' => 'mes', 'Manes.13G051300' => 'mes', 'Manes.16G033700' => 'mes', 'MBI05_g33719_MAGBIO' => 'mbi', 'MBI05_g46325_MAGBIO' => 'mbi', 'MBI07_g24022_MAGBIO' => 'mbi', 'MBI07_g25974_MAGBIO' => 'mbi', 'MBI07_g25975_MAGBIO' => 'mbi', 'MBI07_g27647_MAGBIO' => 'mbi', 'MD03G1235400' => 'mdo', 'MD05G1307700' => 'mdo', 'MD05G1307800' => 'mdo', 'MD05G1307900' => 'mdo', 'MD05G1308000' => 'mdo', 'MD10G1286900' => 'mdo', 'MD10G1287000' => 'mdo', 'MD10G1287100' => 'mdo', 'MD11G1256100' => 'mdo', 'MD11G1256300' => 'mdo', 'Medtr1g090270' => 'mtr', 'Medtr2g014900' => 'mtr', 'Medtr2g014930' => 'mtr', 'Medtr2g083360' => 'mtr', 'Medtr2g083380' => 'mtr', 'Medtr2g083390' => 'mtr', 'Medtr2g083420' => 'mtr', 'Medtr2g083430' => 'mtr', 'Medtr2g083440' => 'mtr', 'Medtr2g083480' => 'mtr', 'Medtr2g083490' => 'mtr', 'Medtr2g086283' => 'mtr', 'Medtr4g059370' => 'mtr', 'Medtr4g079250' => 'mtr', 'Medtr4g079270' => 'mtr', 'Medtr4g079280' => 'mtr', 'MELO3C018849.2' => 'cme', 'MELO3C018850.2' => 'cme', 'MELO3C018851.2' => 'cme', 'MELO3C018853.2' => 'cme', 'MELO3C019397.2' => 'cme', 'MELO3C027096.2' => 'cme', 'Migut.G01283' => 'egut', 'Migut.H01461' => 'egut', 'Migut.I00417' => 'egut', 'Migut.M00773' => 'egut', 'Migut.M01090' => 'egut', 'Migut.M01091' => 'egut', 'MSTRG.17986' => 'ama', 'MSTRG.6816' => 'ama', 'MSTRG.7373' => 'ama', 'Nitab4.5_0000403g0080' => 'nta', 'Nitab4.5_0000858g0040' => 'nta', 'Nitab4.5_0002114g0090' => 'nta', 'Nitab4.5_0005232g0040' => 'nta', 'Nitab4.5_0012974g0030' => 'nta', 'Nitab4.5_0014582g0030' => 'nta', 'Nn1g04266' => 'nnu', 'Nn1g06384' => 'nnu', 'Nn1g06386' => 'nnu', 'Nn1g06876' => 'nnu', 'Nn1g09082' => 'nnu', 'Oeu009288.1' => 'oeu', 'Oeu009706.1' => 'oeu', 'Oeu019298.1' => 'oeu', 'Oeu023106.1' => 'oeu', 'Oeu025353.1' => 'oeu', 'Oeu030270.1' => 'oeu', 'Oeu040511.1' => 'oeu', 'Os11g0457300' => 'osa', 'Os11g0461200' => 'osa', 'Peaxi162Scf00027g00132' => 'pax', 'Peaxi162Scf00135g00117' => 'pax', 'Peaxi162Scf00248g00003' => 'pax', 'Peaxi162Scf00487g00064' => 'pax', 'PGR004G1421' => 'pgr', 'PGR031G1492' => 'pgr', 'PGSC0003DMG400007977' => 'stu', 'PGSC0003DMG400007978' => 'stu', 'PGSC0003DMG400007979' => 'stu', 'PGSC0003DMG400007980' => 'stu', 'PGSC0003DMG400007981' => 'stu', 'PGSC0003DMG400007982' => 'stu', 'PGSC0003DMG400008201' => 'stu', 'PGSC0003DMG400011492' => 'stu', 'PGSC0003DMG400011682' => 'stu', 'PGSC0003DMG400011829' => 'stu', 'PGSC0003DMG400013807' => 'stu', 'PGSC0003DMG400021567' => 'stu', 'PGSC0003DMG400022818' => 'stu', 'PGSC0003DMG400024344' => 'stu', 'PGSC0003DMG400036682' => 'stu', 'Phvul.005G093300' => 'pvu', 'Phvul.005G093500' => 'pvu', 'Phvul.005G093600' => 'pvu', 'Phvul.006G050000' => 'pvu', 'Phvul.007G135800' => 'pvu', 'Phvul.011G115700' => 'pvu', 'Phvul.011G128700' => 'pvu', 'Phvul.011G136400' => 'pvu', 'Phvul.011G136601' => 'pvu', 'Phvul.011G136700' => 'pvu', 'Phvul.011G138500' => 'pvu', 'Phvul.011G138600' => 'pvu', 'Potri.006G179700' => 'ptr', 'Potri.011G061000' => 'ptr', 'Potri.011G097900' => 'ptr', 'Potri.017G041900' => 'ptr', 'Prupe.4G054800' => 'ppe', 'Prupe.4G173600' => 'ppe', 'Prupe.4G173700' => 'ppe', 'Prupe.4G242900' => 'ppe', 'Psat1g201520' => 'psa', 'Psat5g186000' => 'psa', 'Psat5g203280' => 'psa', 'Psat5g251280' => 'psa', 'Psat5g251320' => 'psa', 'Psat5g251360' => 'psa', 'Psat5g251400' => 'psa', 'Psat5g251440' => 'psa', 'Psat7g136680' => 'psa', 'Psat7g137120' => 'psa', 'Psat7g137400' => 'psa', 'Psat7g167000' => 'psa', 'Psat7g220360' => 'psa', 'Psat7g225120' => 'psa', 'PSO017G3422' => 'pso', 'PSO063G1280' => 'pso', 'PSO063G1853' => 'pso', 'PSO063G3355' => 'pso', 'PSO135G0490' => 'pso', 'PSO170G6336' => 'pso', 'PSO386G0265' => 'pso', 'PSO541G5537' => 'pso', 'PSO541G6075' => 'pso', 'PSO675G2055' => 'pso', 'PSO675G2476' => 'pso', 'PSO675G3644' => 'pso', 'PSO724G1214' => 'pso', 'PSO732G0444' => 'pso', 'PSO832G1587' => 'pso', 'QL02p061730' => 'qlo', 'QL03p029671' => 'qlo', 'QL04p001527' => 'qlo', 'QL04p004011' => 'qlo', 'QL04p004049' => 'qlo', 'QL04p045648' => 'qlo', 'QL04p047806' => 'qlo', 'QL05p043558' => 'qlo', 'QL07p010270' => 'qlo', 'QL07p010295' => 'qlo', 'QL07p010305' => 'qlo', 'QL08p040893' => 'qlo', 'QL08p040908' => 'qlo', 'QL10p014021' => 'qlo', 'QL10p014029' => 'qlo', 'QL10p014041' => 'qlo', 'RcHm_v2.0_Chr3g0452471' => 'rch', 'RcHm_v2.0_Chr5g0009541' => 'rch', 'RcHm_v2.0_Chr5g0009561' => 'rch', 'RcHm_v2.0_Chr5g0009571' => 'rch', 'RcHm_v2.0_Chr5g0009591' => 'rch', 'RcHm_v2.0_Chr5g0009621' => 'rch', 'RcHm_v2.0_Chr5g0009631' => 'rch', 'RcHm_v2.0_Chr5g0009641' => 'rch', 'RcHm_v2.0_Chr5g0032301' => 'rch', 'Rhsim06G0135600' => 'rsi', 'Rhsim06G0203300' => 'rsi', 'Rhsim08G0070900' => 'rsi', 'Rhsim13G0181700' => 'rsi', 'Rhsim13G0181800' => 'rsi', 'Sabra06G0136800' => 'sbr', 'Sabra11G0041500' => 'sbr', 'Sabra11G0085000' => 'sbr', 'Sabra11G0091200' => 'sbr', 'Sabra17G0028600' => 'sbr', 'SalBow2G0258' => 'sbo', 'SalBow7G0815' => 'sbo', 'SalBow7G3992' => 'sbo', 'SalBow8G1847' => 'sbo', 'SalBow8G1911' => 'sbo', 'Sc05g0007350' => 'sci', 'Sc05g0007360' => 'sci', 'Sc05g0007370' => 'sci', 'Sc05g0007380' => 'sci', 'Sc17g0002040' => 'sci', 'Sc24g0001140' => 'sci', 'Sed0007621' => 'sed', 'Sed0011894' => 'sed', 'Sed0018404' => 'sed', 'Sed0024147' => 'sed', 'SGA_v2.0_scaffold309G48157' => 'sas', 'SGA_v2.0_scaffold32G13230' => 'sas', 'SGA_v2.0_scaffold73G24225' => 'sas', 'SHI19426' => 'shi', 'Solyc04g010110.3' => 'sly', 'Solyc04g079030.2' => 'sly', 'Solyc04g079050.3' => 'sly', 'Solyc09g059170.3' => 'sly', 'Solyc10g008860.1' => 'sly', 'Sopen04g005250' => 'spe', 'Sopen04g032620' => 'spe', 'Sopen09g022300' => 'spe', 'Sopen10g004650' => 'spe', 'Sp1g37400' => 'spa', 'Sp4g02010' => 'spa', 'Sp6g16060' => 'spa', 'Sp6g16070' => 'spa', 'Sp6g16080' => 'spa', 'Sp6g16090' => 'spa', 'SpUn0727_0020' => 'spa', 'TAR362G0317' => 'tar', 'TAR362G1172' => 'tar', 'TAR362G1320' => 'tar', 'TAR624G0347' => 'tar', 'TAR627G0297' => 'tar', 'TAR629G0006' => 'tar', 'TAR629G0940' => 'tar', 'TAR629G1243' => 'tar', 'TAR629G1787' => 'tar', 'TAR629G3383' => 'tar', 'THA.LOC104799936' => 'tha', 'THA.LOC104811879' => 'tha', 'Thecc.06G178500' => 'tca', 'Thecc.06G178600' => 'tca', 'Thecc.07G099100' => 'tca', 'Thecc.07G100700' => 'tca', 'Thecc.07G100800' => 'tca', 'Thecc.07G101000' => 'tca', 'Thecc.07G101100' => 'tca', 'Thhalv10011473m.g' => 'esa', 'Thhalv10012012m.g' => 'esa', 'Thhalv10012257m.g' => 'esa', 'Thhalv10013471m.g' => 'esa', 'Thhalv10013535m.g' => 'esa', 'Thhalv10013536m.g' => 'esa', 'Thhalv10016070m.g' => 'esa', 'Thhalv10028656m.g' => 'esa', 'TPR.G11664' => 'tpr', 'TPR.G13390' => 'tpr', 'TPR.G15551' => 'tpr', 'TPR.G18535' => 'tpr', 'TPR.G19972' => 'tpr', 'TPR.G19973' => 'tpr', 'TPR.G19975' => 'tpr', 'TPR.G19984' => 'tpr', 'TPR.G19987' => 'tpr', 'TPR.G19990' => 'tpr', 'TPR.G20002' => 'tpr', 'TPR.G30398' => 'tpr', 'TPR.G30456' => 'tpr', 'TPR.G3908' => 'tpr', 'TPR.G40150' => 'tpr', 'TPR.G7271' => 'tpr', 'TWI14G0566' => 'twi', 'TWI36G0156' => 'twi', 'TWI36G0944' => 'twi', 'TWI38G0693' => 'twi', 'TWI38G1659' => 'twi', 'TWI56G0210' => 'twi', 'TWI59G0958' => 'twi', 'unitig_22.g6751' => 'ugi', 'unitig_8.g3363' => 'ugi', 'unitig_85.g27282' => 'ugi', 'unitig_85.g27283' => 'ugi', 'vmacro03894' => 'vma', 'vmacro11897' => 'vma', 'VMungo0540G2338' => 'vmu', 'VMungo0720G2746' => 'vmu', 'VMungo1080G1110' => 'vmu', 'VMungo1127G0870' => 'vmu', 'Zm00001eb196630' => 'zma' ) $gf_id = 'ORTHO05D000640' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'ORTHO05D000640' ) $data_identifier = 'ORTHO05D000640' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 3, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 3, 'arhy' => (int) 16, 'ath' => (int) 11, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 33, 'bca' => (int) 33, 'bol' => (int) 12, 'bra' => (int) 10, 'can' => (int) 1, 'cansat' => (int) 9, 'chi' => (int) 10, 'cru' => (int) 13, 'car' => (int) 11, 'ccan' => (int) 6, 'cfa' => (int) 5, 'ccl' => (int) 4, 'cil' => (int) 2, 'cla' => (int) 8, 'col' => (int) 4, 'cpa' => (int) 3, 'csa' => (int) 5, 'camsi' => (int) 13, 'dca' => (int) 3, 'din' => (int) 8, 'dzi' => (int) 7, 'eca' => (int) 1, 'bvu' => (int) 11, 'egr' => (int) 7, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 21, 'gra' => (int) 11, 'vvi' => (int) 6, 'han' => (int) 2, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 1, 'sun' => (int) 4, 'lal' => (int) 10, 'lja' => (int) 16, 'lonja' => (int) 10, 'lsa' => (int) 2, 'mes' => (int) 6, 'mbi' => (int) 6, 'mdo' => (int) 10, 'mtr' => (int) 16, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 3, 'nta' => (int) 6, 'nnu' => (int) 5, 'oeu' => (int) 7, 'osa' => (int) 2, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 15, 'pvu' => (int) 12, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 14, 'pso' => (int) 15, 'qlo' => (int) 16, 'rch' => (int) 9, 'rsi' => (int) 5, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 6, 'sed' => (int) 4, 'sas' => (int) 3, 'shi' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 4, 'spa' => (int) 7, 'tar' => (int) 10, 'tha' => (int) 2, 'tca' => (int) 7, 'esa' => (int) 8, 'tpr' => (int) 16, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 4, 'zma' => (int) 1 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb196630' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1